Luciferase:Article Title: Targeted introduction of T cell receptor genes at the TRAC locus in cytotoxic T lymphocytes regenerated from human iPSCs by genome editing.
Article Snippet: Cytotoxic T lymphocytes (CTLs) regenerated from induced pluripotent stem cells (iPSCs) have emerged as an ideal cellular material for introduction of T-cell receptor (TCR) genes specific for defined tumor antigens, as they can be expanded virtually indefinitely while retaining potent cytolytic activity.. Indeed, we previously demonstrated that introducing tumor antigen-specific TCR genes into iPSC-derived CTLs using retroviral or lentiviral vectors confers effective antitumor activity.. Nonetheless, viral vector-mediated transfer results in random, multicopy genomic integration, which may yield heterogeneous TCR expression and oncogenic transformation depending on the insertion site.
Generated:Article Title: Targeted introduction of T cell receptor genes at the TRAC locus in cytotoxic T lymphocytes regenerated from human iPSCs by genome editing.
Article Snippet: Cytotoxic T lymphocytes (CTLs) regenerated from induced pluripotent stem cells (iPSCs) have emerged as an ideal cellular material for introduction of T-cell receptor (TCR) genes specific for defined tumor antigens, as they can be expanded virtually indefinitely while retaining potent cytolytic activity.. Indeed, we previously demonstrated that introducing tumor antigen-specific TCR genes into iPSC-derived CTLs using retroviral or lentiviral vectors confers effective antitumor activity.. Nonetheless, viral vector-mediated transfer results in random, multicopy genomic integration, which may yield heterogeneous TCR expression and oncogenic transformation depending on the insertion site.
Gene Expression:Article Title: CDK12 inhibition reveals melanoma dependence on the RUNX1/CBFβ complex for genomic stability.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER RNA microarrays across normal skin and melanoma tissues Gene Expression Omnibus (GEO) GEO: GSE7553 Homologous Recombination gold standard signature Sherill-Rofe et al. 30 Revised Table S1, https://academic.oup.com/ narcancer/article-lookup/doi/10.1093/narcan/ zcac013#supplementary-data RNA-seq in A375 melanoma cells upon SR-4835 and/or AI-10-49 treatment for 48 h Gene Expression Omnibus (GEO) GEO: GSE308214 Experimental models: Cell lines 293T ATCC Cat# CRL-3216; RRID: CVCL_0063 A375 ATCC Cat# CRL-1619; RRID: CVCL_0132 UACC62 AddexBio Cat# C0020003; RRID: CVCL_1780 WM3918F Rockland Cat# WM3918-01-0001; RRID: CVCL_C279 SKMEL2 ATCC Cat# HTB-68; RRID: CVCL_0069 MEWO ATCC Cat# HTB-65; RRID: CVCL_0445 WM983B Rockland Cat# WM983B-01-0001; RRID: CVCL_6809 MELJUSO DSMZ Cat# ACC74; RRID: CVCL_1403 SKMEL5 ATCC Cat# HTB-70; RRID: CVCL_0527 Experimental models: Organisms/strains NOD.Cg-Prkdc scid Il2rg tm1Wjl /SzJ Jackson Laboratory IMSR_JAX:005557 Oligonucleotides Primers for qPCR, see Table S2 This paper N/A Recombinant DNA pRSV-Rev Addgene Cat# 12253 pMDLg/pRRE Addgene Cat# 12251 shRUNX1 Sigma-Aldrich TRCN0000013658; TRCN0000013659 sgTP53 Millipore Sigma HS5000019613 pFUGW-EFSp-Cas9-P2A-Zeo ChemoGenix screening plateform, IRIC N/A pMD2- VSVG Addgene Cat# 12259 Software and algorithms ImageJ Schneider et al. 58 https://imagej.nih.gov/ij/ Zein Blue Zeiss https://www.zeiss.fr/microscopie/produits/ microscope-software/zen-lite/ zen-2-lite-download.html FACSDiva BD Bioscience https://www.bdbiosciences.com/us/ instruments/research/software/ flow-cytometry-acquisition/ bd-facsdiva-software/m/111112/ resourcestools FlowJo FlowJo https://www.flowjo.com/solutions/flowjo/ downloads GraphPad Prism 10 GraphPad https://www.graphpad.com/ 18 Cell Reports 44, 116495, November 25, 2025 .. A375, HEK293T, MEWO, SKMEL2 and SKMEL5 cell lines were obtained from ATCC.
Homologous Recombination:Article Title: CDK12 inhibition reveals melanoma dependence on the RUNX1/CBFβ complex for genomic stability.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER RNA microarrays across normal skin and melanoma tissues Gene Expression Omnibus (GEO) GEO: GSE7553 Homologous Recombination gold standard signature Sherill-Rofe et al. 30 Revised Table S1, https://academic.oup.com/ narcancer/article-lookup/doi/10.1093/narcan/ zcac013#supplementary-data RNA-seq in A375 melanoma cells upon SR-4835 and/or AI-10-49 treatment for 48 h Gene Expression Omnibus (GEO) GEO: GSE308214 Experimental models: Cell lines 293T ATCC Cat# CRL-3216; RRID: CVCL_0063 A375 ATCC Cat# CRL-1619; RRID: CVCL_0132 UACC62 AddexBio Cat# C0020003; RRID: CVCL_1780 WM3918F Rockland Cat# WM3918-01-0001; RRID: CVCL_C279 SKMEL2 ATCC Cat# HTB-68; RRID: CVCL_0069 MEWO ATCC Cat# HTB-65; RRID: CVCL_0445 WM983B Rockland Cat# WM983B-01-0001; RRID: CVCL_6809 MELJUSO DSMZ Cat# ACC74; RRID: CVCL_1403 SKMEL5 ATCC Cat# HTB-70; RRID: CVCL_0527 Experimental models: Organisms/strains NOD.Cg-Prkdc scid Il2rg tm1Wjl /SzJ Jackson Laboratory IMSR_JAX:005557 Oligonucleotides Primers for qPCR, see Table S2 This paper N/A Recombinant DNA pRSV-Rev Addgene Cat# 12253 pMDLg/pRRE Addgene Cat# 12251 shRUNX1 Sigma-Aldrich TRCN0000013658; TRCN0000013659 sgTP53 Millipore Sigma HS5000019613 pFUGW-EFSp-Cas9-P2A-Zeo ChemoGenix screening plateform, IRIC N/A pMD2- VSVG Addgene Cat# 12259 Software and algorithms ImageJ Schneider et al. 58 https://imagej.nih.gov/ij/ Zein Blue Zeiss https://www.zeiss.fr/microscopie/produits/ microscope-software/zen-lite/ zen-2-lite-download.html FACSDiva BD Bioscience https://www.bdbiosciences.com/us/ instruments/research/software/ flow-cytometry-acquisition/ bd-facsdiva-software/m/111112/ resourcestools FlowJo FlowJo https://www.flowjo.com/solutions/flowjo/ downloads GraphPad Prism 10 GraphPad https://www.graphpad.com/ 18 Cell Reports 44, 116495, November 25, 2025 .. A375, HEK293T, MEWO, SKMEL2 and SKMEL5 cell lines were obtained from ATCC.
RNA Sequencing:Article Title: CDK12 inhibition reveals melanoma dependence on the RUNX1/CBFβ complex for genomic stability.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER RNA microarrays across normal skin and melanoma tissues Gene Expression Omnibus (GEO) GEO: GSE7553 Homologous Recombination gold standard signature Sherill-Rofe et al. 30 Revised Table S1, https://academic.oup.com/ narcancer/article-lookup/doi/10.1093/narcan/ zcac013#supplementary-data RNA-seq in A375 melanoma cells upon SR-4835 and/or AI-10-49 treatment for 48 h Gene Expression Omnibus (GEO) GEO: GSE308214 Experimental models: Cell lines 293T ATCC Cat# CRL-3216; RRID: CVCL_0063 A375 ATCC Cat# CRL-1619; RRID: CVCL_0132 UACC62 AddexBio Cat# C0020003; RRID: CVCL_1780 WM3918F Rockland Cat# WM3918-01-0001; RRID: CVCL_C279 SKMEL2 ATCC Cat# HTB-68; RRID: CVCL_0069 MEWO ATCC Cat# HTB-65; RRID: CVCL_0445 WM983B Rockland Cat# WM983B-01-0001; RRID: CVCL_6809 MELJUSO DSMZ Cat# ACC74; RRID: CVCL_1403 SKMEL5 ATCC Cat# HTB-70; RRID: CVCL_0527 Experimental models: Organisms/strains NOD.Cg-Prkdc scid Il2rg tm1Wjl /SzJ Jackson Laboratory IMSR_JAX:005557 Oligonucleotides Primers for qPCR, see Table S2 This paper N/A Recombinant DNA pRSV-Rev Addgene Cat# 12253 pMDLg/pRRE Addgene Cat# 12251 shRUNX1 Sigma-Aldrich TRCN0000013658; TRCN0000013659 sgTP53 Millipore Sigma HS5000019613 pFUGW-EFSp-Cas9-P2A-Zeo ChemoGenix screening plateform, IRIC N/A pMD2- VSVG Addgene Cat# 12259 Software and algorithms ImageJ Schneider et al. 58 https://imagej.nih.gov/ij/ Zein Blue Zeiss https://www.zeiss.fr/microscopie/produits/ microscope-software/zen-lite/ zen-2-lite-download.html FACSDiva BD Bioscience https://www.bdbiosciences.com/us/ instruments/research/software/ flow-cytometry-acquisition/ bd-facsdiva-software/m/111112/ resourcestools FlowJo FlowJo https://www.flowjo.com/solutions/flowjo/ downloads GraphPad Prism 10 GraphPad https://www.graphpad.com/ 18 Cell Reports 44, 116495, November 25, 2025 .. A375, HEK293T, MEWO, SKMEL2 and SKMEL5 cell lines were obtained from ATCC.
Real-time Polymerase Chain Reaction:Article Title: CDK12 inhibition reveals melanoma dependence on the RUNX1/CBFβ complex for genomic stability.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER RNA microarrays across normal skin and melanoma tissues Gene Expression Omnibus (GEO) GEO: GSE7553 Homologous Recombination gold standard signature Sherill-Rofe et al. 30 Revised Table S1, https://academic.oup.com/ narcancer/article-lookup/doi/10.1093/narcan/ zcac013#supplementary-data RNA-seq in A375 melanoma cells upon SR-4835 and/or AI-10-49 treatment for 48 h Gene Expression Omnibus (GEO) GEO: GSE308214 Experimental models: Cell lines 293T ATCC Cat# CRL-3216; RRID: CVCL_0063 A375 ATCC Cat# CRL-1619; RRID: CVCL_0132 UACC62 AddexBio Cat# C0020003; RRID: CVCL_1780 WM3918F Rockland Cat# WM3918-01-0001; RRID: CVCL_C279 SKMEL2 ATCC Cat# HTB-68; RRID: CVCL_0069 MEWO ATCC Cat# HTB-65; RRID: CVCL_0445 WM983B Rockland Cat# WM983B-01-0001; RRID: CVCL_6809 MELJUSO DSMZ Cat# ACC74; RRID: CVCL_1403 SKMEL5 ATCC Cat# HTB-70; RRID: CVCL_0527 Experimental models: Organisms/strains NOD.Cg-Prkdc scid Il2rg tm1Wjl /SzJ Jackson Laboratory IMSR_JAX:005557 Oligonucleotides Primers for qPCR, see Table S2 This paper N/A Recombinant DNA pRSV-Rev Addgene Cat# 12253 pMDLg/pRRE Addgene Cat# 12251 shRUNX1 Sigma-Aldrich TRCN0000013658; TRCN0000013659 sgTP53 Millipore Sigma HS5000019613 pFUGW-EFSp-Cas9-P2A-Zeo ChemoGenix screening plateform, IRIC N/A pMD2- VSVG Addgene Cat# 12259 Software and algorithms ImageJ Schneider et al. 58 https://imagej.nih.gov/ij/ Zein Blue Zeiss https://www.zeiss.fr/microscopie/produits/ microscope-software/zen-lite/ zen-2-lite-download.html FACSDiva BD Bioscience https://www.bdbiosciences.com/us/ instruments/research/software/ flow-cytometry-acquisition/ bd-facsdiva-software/m/111112/ resourcestools FlowJo FlowJo https://www.flowjo.com/solutions/flowjo/ downloads GraphPad Prism 10 GraphPad https://www.graphpad.com/ 18 Cell Reports 44, 116495, November 25, 2025 .. A375, HEK293T, MEWO, SKMEL2 and SKMEL5 cell lines were obtained from ATCC.
Recombinant:Article Title: CDK12 inhibition reveals melanoma dependence on the RUNX1/CBFβ complex for genomic stability.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER RNA microarrays across normal skin and melanoma tissues Gene Expression Omnibus (GEO) GEO: GSE7553 Homologous Recombination gold standard signature Sherill-Rofe et al. 30 Revised Table S1, https://academic.oup.com/ narcancer/article-lookup/doi/10.1093/narcan/ zcac013#supplementary-data RNA-seq in A375 melanoma cells upon SR-4835 and/or AI-10-49 treatment for 48 h Gene Expression Omnibus (GEO) GEO: GSE308214 Experimental models: Cell lines 293T ATCC Cat# CRL-3216; RRID: CVCL_0063 A375 ATCC Cat# CRL-1619; RRID: CVCL_0132 UACC62 AddexBio Cat# C0020003; RRID: CVCL_1780 WM3918F Rockland Cat# WM3918-01-0001; RRID: CVCL_C279 SKMEL2 ATCC Cat# HTB-68; RRID: CVCL_0069 MEWO ATCC Cat# HTB-65; RRID: CVCL_0445 WM983B Rockland Cat# WM983B-01-0001; RRID: CVCL_6809 MELJUSO DSMZ Cat# ACC74; RRID: CVCL_1403 SKMEL5 ATCC Cat# HTB-70; RRID: CVCL_0527 Experimental models: Organisms/strains NOD.Cg-Prkdc scid Il2rg tm1Wjl /SzJ Jackson Laboratory IMSR_JAX:005557 Oligonucleotides Primers for qPCR, see Table S2 This paper N/A Recombinant DNA pRSV-Rev Addgene Cat# 12253 pMDLg/pRRE Addgene Cat# 12251 shRUNX1 Sigma-Aldrich TRCN0000013658; TRCN0000013659 sgTP53 Millipore Sigma HS5000019613 pFUGW-EFSp-Cas9-P2A-Zeo ChemoGenix screening plateform, IRIC N/A pMD2- VSVG Addgene Cat# 12259 Software and algorithms ImageJ Schneider et al. 58 https://imagej.nih.gov/ij/ Zein Blue Zeiss https://www.zeiss.fr/microscopie/produits/ microscope-software/zen-lite/ zen-2-lite-download.html FACSDiva BD Bioscience https://www.bdbiosciences.com/us/ instruments/research/software/ flow-cytometry-acquisition/ bd-facsdiva-software/m/111112/ resourcestools FlowJo FlowJo https://www.flowjo.com/solutions/flowjo/ downloads GraphPad Prism 10 GraphPad https://www.graphpad.com/ 18 Cell Reports 44, 116495, November 25, 2025 .. A375, HEK293T, MEWO, SKMEL2 and SKMEL5 cell lines were obtained from ATCC.
Software:Article Title: CDK12 inhibition reveals melanoma dependence on the RUNX1/CBFβ complex for genomic stability.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER RNA microarrays across normal skin and melanoma tissues Gene Expression Omnibus (GEO) GEO: GSE7553 Homologous Recombination gold standard signature Sherill-Rofe et al. 30 Revised Table S1, https://academic.oup.com/ narcancer/article-lookup/doi/10.1093/narcan/ zcac013#supplementary-data RNA-seq in A375 melanoma cells upon SR-4835 and/or AI-10-49 treatment for 48 h Gene Expression Omnibus (GEO) GEO: GSE308214 Experimental models: Cell lines 293T ATCC Cat# CRL-3216; RRID: CVCL_0063 A375 ATCC Cat# CRL-1619; RRID: CVCL_0132 UACC62 AddexBio Cat# C0020003; RRID: CVCL_1780 WM3918F Rockland Cat# WM3918-01-0001; RRID: CVCL_C279 SKMEL2 ATCC Cat# HTB-68; RRID: CVCL_0069 MEWO ATCC Cat# HTB-65; RRID: CVCL_0445 WM983B Rockland Cat# WM983B-01-0001; RRID: CVCL_6809 MELJUSO DSMZ Cat# ACC74; RRID: CVCL_1403 SKMEL5 ATCC Cat# HTB-70; RRID: CVCL_0527 Experimental models: Organisms/strains NOD.Cg-Prkdc scid Il2rg tm1Wjl /SzJ Jackson Laboratory IMSR_JAX:005557 Oligonucleotides Primers for qPCR, see Table S2 This paper N/A Recombinant DNA pRSV-Rev Addgene Cat# 12253 pMDLg/pRRE Addgene Cat# 12251 shRUNX1 Sigma-Aldrich TRCN0000013658; TRCN0000013659 sgTP53 Millipore Sigma HS5000019613 pFUGW-EFSp-Cas9-P2A-Zeo ChemoGenix screening plateform, IRIC N/A pMD2- VSVG Addgene Cat# 12259 Software and algorithms ImageJ Schneider et al. 58 https://imagej.nih.gov/ij/ Zein Blue Zeiss https://www.zeiss.fr/microscopie/produits/ microscope-software/zen-lite/ zen-2-lite-download.html FACSDiva BD Bioscience https://www.bdbiosciences.com/us/ instruments/research/software/ flow-cytometry-acquisition/ bd-facsdiva-software/m/111112/ resourcestools FlowJo FlowJo https://www.flowjo.com/solutions/flowjo/ downloads GraphPad Prism 10 GraphPad https://www.graphpad.com/ 18 Cell Reports 44, 116495, November 25, 2025 .. A375, HEK293T, MEWO, SKMEL2 and SKMEL5 cell lines were obtained from ATCC.
Microscopy:Article Title: CDK12 inhibition reveals melanoma dependence on the RUNX1/CBFβ complex for genomic stability.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER RNA microarrays across normal skin and melanoma tissues Gene Expression Omnibus (GEO) GEO: GSE7553 Homologous Recombination gold standard signature Sherill-Rofe et al. 30 Revised Table S1, https://academic.oup.com/ narcancer/article-lookup/doi/10.1093/narcan/ zcac013#supplementary-data RNA-seq in A375 melanoma cells upon SR-4835 and/or AI-10-49 treatment for 48 h Gene Expression Omnibus (GEO) GEO: GSE308214 Experimental models: Cell lines 293T ATCC Cat# CRL-3216; RRID: CVCL_0063 A375 ATCC Cat# CRL-1619; RRID: CVCL_0132 UACC62 AddexBio Cat# C0020003; RRID: CVCL_1780 WM3918F Rockland Cat# WM3918-01-0001; RRID: CVCL_C279 SKMEL2 ATCC Cat# HTB-68; RRID: CVCL_0069 MEWO ATCC Cat# HTB-65; RRID: CVCL_0445 WM983B Rockland Cat# WM983B-01-0001; RRID: CVCL_6809 MELJUSO DSMZ Cat# ACC74; RRID: CVCL_1403 SKMEL5 ATCC Cat# HTB-70; RRID: CVCL_0527 Experimental models: Organisms/strains NOD.Cg-Prkdc scid Il2rg tm1Wjl /SzJ Jackson Laboratory IMSR_JAX:005557 Oligonucleotides Primers for qPCR, see Table S2 This paper N/A Recombinant DNA pRSV-Rev Addgene Cat# 12253 pMDLg/pRRE Addgene Cat# 12251 shRUNX1 Sigma-Aldrich TRCN0000013658; TRCN0000013659 sgTP53 Millipore Sigma HS5000019613 pFUGW-EFSp-Cas9-P2A-Zeo ChemoGenix screening plateform, IRIC N/A pMD2- VSVG Addgene Cat# 12259 Software and algorithms ImageJ Schneider et al. 58 https://imagej.nih.gov/ij/ Zein Blue Zeiss https://www.zeiss.fr/microscopie/produits/ microscope-software/zen-lite/ zen-2-lite-download.html FACSDiva BD Bioscience https://www.bdbiosciences.com/us/ instruments/research/software/ flow-cytometry-acquisition/ bd-facsdiva-software/m/111112/ resourcestools FlowJo FlowJo https://www.flowjo.com/solutions/flowjo/ downloads GraphPad Prism 10 GraphPad https://www.graphpad.com/ 18 Cell Reports 44, 116495, November 25, 2025 .. A375, HEK293T, MEWO, SKMEL2 and SKMEL5 cell lines were obtained from ATCC.
Cell Culture:Article Title: Tissue-Like Scaffolds Created by Two-Photon Polymerization for Testing Cancer Cell Behavior in Confined Environments.
Article Snippet: Cancer cell behavior in confined spaces is strongly related to cell-specific morphological deformations, which further influence the migration and invasion mechanisms during cancer metastasis processes.. It is of great interest to create extracellular matrix-like environments with biomimetic physical properties that will be used as scaffold models to test cancer cell invasive potential.. Herein, we applied two-photon polymerization to create tissue-like poroelastic scaffolds with narrow confined pores in polymeric materials.
Article Title: Systematic identification of pan-cancer single-gene expression biomarkers in drug high-throughput screens
Article Snippet: .. A375 melanoma cells (source: ATCC) were cultured in Gibco Dulbecco’s Modified Eagle Medium supplemented with 10% Fetal Bovine Serum and 1% Penicillin-Streptomycin (10000 U/mL) in a humidified incubator (37°C, 5% CO2). .. 10.000 A375 melanoma cells per well were reverse transfected in an opaque, white, flat-bottom plate, using SLFN11 Silencer Select Pre-designed siRNA (Ambion: 4392420) and Silencer Negative Control siRNA #1 (Ambion: AM4611) with Lipofectamine RNAiMAX transfection reagent (Invitrogen: 13778075) and Gibco Opti-MEM reduced serum medium, following the manufacturer’s protocol for 1.5 pmol siRNA per well.
Modification:Article Title: Systematic identification of pan-cancer single-gene expression biomarkers in drug high-throughput screens
Article Snippet: .. A375 melanoma cells (source: ATCC) were cultured in Gibco Dulbecco’s Modified Eagle Medium supplemented with 10% Fetal Bovine Serum and 1% Penicillin-Streptomycin (10000 U/mL) in a humidified incubator (37°C, 5% CO2). .. 10.000 A375 melanoma cells per well were reverse transfected in an opaque, white, flat-bottom plate, using SLFN11 Silencer Select Pre-designed siRNA (Ambion: 4392420) and Silencer Negative Control siRNA #1 (Ambion: AM4611) with Lipofectamine RNAiMAX transfection reagent (Invitrogen: 13778075) and Gibco Opti-MEM reduced serum medium, following the manufacturer’s protocol for 1.5 pmol siRNA per well.
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